2020

Zhang, Y., Chen, F., Fonseca, N. A., He, Y., Fujita, M., Nakagawa, H., … Creighton, C. J. (2020). High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations. Nature Communications, 11(1), 1–14. https://doi.org/10.1038/s41467-019-13885-w

Calabrese, C., Davidson, N. R., Demircioğlu, D., Fonseca, N. A., He, Y., Kahles, A., … Zhang, Z. (2020). Genomic basis for RNA alterations in cancer. Nature, 578(7793), 129–136. https://doi.org/10.1038/s41586-020-1970-0

Campbell, P. J., Getz, G., Korbel, J. O., Stuart, J. M., Jennings, J. L., Stein, L. D., … Zhang, J. (2020). Pan-cancer analysis of whole genomes. Nature, 578(7793), 82–93. https://doi.org/10.1038/s41586-020-1969-6

Norte, A. C., Margos, G., Becker, N. S., Albino Ramos, J., Núncio, M. S., Fingerle, V., … Lopes de Carvalho, I. (2020). Host dispersal shapes the population structure of a tick‐borne bacterial pathogen. Molecular Ecology. https://doi.org/10.1111/mec.15336

 

2019

Papatheodorou, I., Moreno, P., Manning, J., Fuentes, A. M.-P., George, N., Fexova, S., … Brazma, A. (2019). Expression Atlas update: from tissues to single cells. Nucleic Acids Research. https://doi.org/10.1093/nar/gkz947

Demircioğlu, D., Cukuroglu, E., Kindermans, M., Nandi, T., Calabrese, C., Fonseca, N. A., … Göke, J. (2019). A Pan-cancer Transcriptome Analysis Reveals Pervasive Regulation through Alternative Promoters. Cell, 178(6), 1465-1477.e17. https://doi.org/10.1016/j.cell.2019.08.018

Amorim, F., Razgour, O., Mata, V. A., Lopes, S., Godinho, R., Ibáñez, C., … Rebelo, H. (2019). Evolutionary history of the European free‐tailed bat, a tropical affinity species spanning across the Mediterranean Basin. Journal of Zoological Systematics and Evolutionary Research. https://doi.org/10.1111/jzs.12326

Correia, E., Granadeiro, J., Mata, V., Regalla, A., & Catry, P. (2019). Trophic interactions between migratory seabirds, predatory fishes and small pelagics in coastal West Africa. Marine Ecology Progress Series, 622, 177–189. https://doi.org/10.3354/meps13022

Athar, A., Füllgrabe, A., George, N., Iqbal, H., Huerta, L., Ali, A., … Brazma, A. (2019). ArrayExpress update – from bulk to single-cell expression data. Nucleic Acids Research, 47(D1), D711–D715. DOI: https://doi.org/10.1093/nar/gky964

Correia, M., Heleno, R., Silva, L. P., Costa, J. M., & Rodríguez‐Echeverría, S. (2019). First evidence for the joint dispersal of mycorrhizal fungi and plant diaspores by birds. New Phytologist, 222(2), 1054–1060. DOI: https://doi.org/10.1111/nph.15571

da Silva, L. P., Heleno, R. H., Costa, J. M., Valente, M., Mata, V. A., Gonçalves, S. C., … Ramos, J. A. (2019). Natural woodlands hold more diverse, abundant, and unique biota than novel anthropogenic forests: a multi-group assessment. European Journal of Forest Research. DOI: https://doi.org/10.1007/s10342-019-01183-5

Herman, J. S., Wójcik, J. M., Stojak, J., Paupério, J., Jaarola, M., & Searle, J. B. (2019). Genetic variation in field voles (Microtus agrestis) from the British Isles: selective sweeps or population bottlenecks? DOI: https://doi.org/10.1093/biolinnean/bly213

 

2018

Corley, M. F. V, Ferreira, S., Grundy, D., Nunes, J., Pires, P., & Rosete, J. (2018). New and interesting Portuguese Lepidoptera records from 2017 (Insecta: Lepidoptera). SHILAP Revista de Lepidopterología, 46, 551–576. Retrieved from https://www.redalyc.org/articulo.oa?id=45560393002

Corley, M. F. V., Rosete, J., Gonçalves, A. R., Mata, V., Nunes, J., & Pires, P. (2018). New and interesting Portuguese Lepidoptera records from 2016 (Insecta: Lepidoptera). SHILAP Revista de Lepidopterología, 46, 33–56. Retrieved from https://www.redalyc.org/jatsRepo/455/45560385004/html/index.html

Aizpurua, O., Budinski, I., Georgiakakis, P., Gopalakrishnan, S., Ibañez, C., Mata, V., … Alberdi, A. (2018). Agriculture shapes the trophic niche of a bat preying on multiple pest arthropods across Europe: Evidence from DNA metabarcoding. Molecular Ecology, 27(3), 815–825. DOI: https://doi.org/10.1111/mec.14474

Carvalho, F., Lourenço, A., Carvalho, R., Alves, P. C., Mira, A., & Beja, P. (2018). The effects of a motorway on movement behaviour and gene flow in a forest carnivore: Joint evidence from road mortality, radio tracking and genetics. Landscape and Urban Planning, 178, 217–227. DOI: https://doi.org/https://doi.org/10.1016/j.landurbplan.2018.06.007

Crespo, L., Domènech, M., Enguídanos, A., Malumbres-Olarte, J., Cardoso, P., Moya-Laraño, J., … Arnedo, M. (2018). A DNA barcode-assisted annotated checklist of the spider (Arachnida, Araneae) communities associated to white oak woodlands in Spanish National Parks. Biodiversity Data Journal, 6, e29443. DOI: https://doi.org/10.3897/BDJ.6.e29443

Filipe, A. F., Feio, M. J., Garcia-Raventós, A., Ramião, J. P., Pace, G., Martins, F. M., & Magalhães, M. F. (2018). The European Water Framework Directive facing current challenges: recommendations for a more efficient biological assessment of inland surface waters. Inland Waters, 1–9. DOI: https://doi.org/10.1080/20442041.2018.1494973

Quaglietta, L., Paupério, J., Martins, F. M. S., Alves, P. C., & Beja, P. (2018). Recent range contractions in the globally threatened Pyrenean desman highlight the importance of stream headwater refugia. Animal Conservation, 21(6), 515–525. DOI: https://doi.org/10.1111/acv.12422

Sabino-Marques, H., Ferreira, C. M., Paupério, J., Costa, P., Barbosa, S., Encarnação, C., … Pita, R. (2018). Combining genetic non-invasive sampling with spatially explicit capture-recapture models for density estimation of a patchily distributed small mammal. European Journal of Wildlife Research, 64(4), 44. DOI: https://doi.org/10.1007/s10344-018-1206-x

 

2017

Barbosa, S., Paupério, J., Herman, J. S., Ferreira, C. M., Pita, R., Vale-Gonçalves, H. M., … Searle, J. B. (2017). Endemic species may have complex histories: within-refugium phylogeography of an endangered Iberian vole. Molecular Ecology, 26(3), 951–967. DOI: https://doi.org/10.1111/mec.13994

Bassett, I. E., Horner, I. J., Hough, E. G., Wolber, F. M., Egeter, B., Stanley, M. C., & Krull, C. R. (2017). Ingestion of infected roots by feral pigs provides a minor vector pathway for kauri dieback disease Phytophthora agathidicida. Forestry: An International Journal of Forest Research, 90(5), 640–648. DOI: https://doi.org/10.1093/forestry/cpx019

McInnes, J. C., Alderman, R., Lea, M.-A., Raymond, B., Deagle, B. E., Phillips, R. A., … Jarman, S. N. (2017). High occurrence of jellyfish predation by black-browed and Campbell albatross identified by DNA metabarcoding. Molecular Ecology, 26(18), 4831–4845. DOI: https://doi.org/10.1111/mec.14245

Pina, S., Vasconcelos, S., Reino, L., Santana, J., Beja, P., Sánchez-Oliver, J. S., … Ferreira, S. (2017). The Orthoptera of Castro Verde Special Protection Area (Southern Portugal): new data and conservation value. ZooKeys, 691, 19–48. DOI: https://doi.org/10.3897/zookeys.691.14842

 

 

2016

Biscontin, A., Frigato, E., Sales, G., Mazzotta, G. M., Teschke, M., De Pittà, C., … Bertolucci, C. (2016). The opsin repertoire of the Antarctic krill Euphausia superba. Marine Genomics, 29, 61–68. DOI: https://doi.org/10.1016/J.MARGEN.2016.04.010

Jarman, S. N., & Deagle, B. E. (2016). Genetics of Antarctic Krill. DOI: https://doi.org/10.1007/978-3-319-29279-3_7

Leese, F., Altermatt, F., Bouchez, A., Ekrem, T., Hering, D., Meissner, K., … Zimmermann, J. (2016). DNAqua-Net: Developing new genetic tools for bioassessment and monitoring of aquatic ecosystems in Europe. Research Ideas and Outcomes, 2, e11321. DOI: https://doi.org/10.3897/rio.2.e11321

Mata, V. A., Amorim, F., Corley, M. F. V., McCracken, G. F., Rebelo, H., & Beja, P. (2016). Female dietary bias towards large migratory moths in the European free-tailed bat ( Tadarida teniotis ). Biology Letters, 12(3), 20150988. DOI: https://doi.org/10.1098/rsbl.2015.0988

McInnes, J. C., Raymond, B., Phillips, R. A., Jarman, S. N., Lea, M.-A., & Alderman, R. (2016). A review of methods used to analyse albatross diets—assessing priorities across their range. ICES Journal of Marine Science: Journal Du Conseil, 73(9), 2125–2137. DOI: https://doi.org/10.1093/icesjms/fsw105

Toomey, L., Welsford, D., Appleyard, S. A., Polanowski, A., Faux, C., Deagle, B. E., … Jarman, S. (2016). Genetic structure of Patagonian toothfish populations from otolith DNA. Antarctic Science, 28(05), 347–360. DOI: https://doi.org/10.1017/S0954102016000183

Vaz Pinto, P., Beja, P., Ferrand, N., & Godinho, R. (2016). Hybridization following population collapse in a critically endangered antelope. Scientific Reports, 6(1), 18788. DOI: https://doi.org/10.1038/srep18788